EpiTxDb
Storing and accessing epitranscriptomic information using the AnnotationDbi interface
Bioconductor version: 3.23 · Package version: 1.24.0
EpiTxDb facilitates the storage of epitranscriptomic information. More specifically, it can keep track of modification identity, position, the enzyme for introducing it on the RNA, a specifier which determines the position on the RNA to be modified and the literature references each modification is associated with.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EpiTxDb") Details
| Maintainer | Felix G.M. Ernst <felix.gm.ernst@outlook.com> |
| Author | Felix G.M. Ernst [aut, cre] (ORCID: <https://orcid.org/0000-0001-5064-0928>) |
| License | Artistic-2.0 |
| URL | https://github.com/FelixErnst/EpiTxDb |
| Bug Reports | https://github.com/FelixErnst/EpiTxDb/issues |
| Downloads rank | 318 |
| Source branch | RELEASE_3_23 |
| biocViews | Epitranscriptomics, Software |
Documentation
- EpiTxDb: Storing and accessing epitranscriptomic information using the AnnotationDbi interface
- EpiTxDb: creating an EpiTxDb object
Download
Dependencies
Depends: R (>= 4.0), AnnotationDbi, Modstrings
Imports: methods, utils, httr, xml2, curl, rex, GenomicFeatures, txdbmaker, GenomicRanges, Seqinfo, BiocGenerics, BiocFileCache, S4Vectors, IRanges, RSQLite, DBI, Biostrings, tRNAdbImport
Suggests: BiocStyle, knitr, rmarkdown, testthat, httptest, AnnotationHub, ensembldb, ggplot2, EpiTxDb.Hs.hg38, BSgenome.Hsapiens.UCSC.hg38, BSgenome.Scerevisiae.UCSC.sacCer3, TxDb.Hsapiens.UCSC.hg38.knownGene
Reverse dependencies
Depends On Me (3): EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3