EnrichedHeatmap
Making Enriched Heatmaps
Bioconductor version: 3.23 · Package version: 1.42.0
Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EnrichedHeatmap") Details
| Maintainer | Zuguang Gu <guzuguang@suat-sz.edu.cn> |
| Author | Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>) |
| License | MIT + file LICENSE |
| URL | https://github.com/jokergoo/EnrichedHeatmap |
| Downloads rank | 1381 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, GenomeAnnotation, Sequencing, Software, Visualization |
Documentation
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Dependencies
Depends: R (>= 4.0.0), methods, grid, ComplexHeatmap (>= 2.11.0), GenomicRanges
Imports: matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges
LinkingTo: Rcpp
Suggests: testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer
Reverse dependencies
Imports Me (1): profileplyr
Suggests Me (4): ComplexHeatmap, epistack, extraChIPs, InteractiveComplexHeatmap