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EnrichedHeatmap

Making Enriched Heatmaps

Bioconductor version: 3.23 · Package version: 1.42.0

Enriched heatmap is a special type of heatmap which visualizes the enrichment of genomic signals on specific target regions. Here we implement enriched heatmap by ComplexHeatmap package. Since this type of heatmap is just a normal heatmap but with some special settings, with the functionality of ComplexHeatmap, it would be much easier to customize the heatmap as well as concatenating to a list of heatmaps to show correspondance between different data sources.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnrichedHeatmap")

Details

MaintainerZuguang Gu <guzuguang@suat-sz.edu.cn>
AuthorZuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)
LicenseMIT + file LICENSE
URLhttps://github.com/jokergoo/EnrichedHeatmap
Downloads rank1381
Source branchRELEASE_3_23
biocViewsCoverage, GenomeAnnotation, Sequencing, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.0.0), methods, grid, ComplexHeatmap (>= 2.11.0), GenomicRanges

Imports: matrixStats, stats, GetoptLong, Rcpp, utils, locfit, circlize (>= 0.4.5), IRanges

LinkingTo: Rcpp

Suggests: testthat (>= 0.3), knitr, markdown, rmarkdown, genefilter, RColorBrewer

Reverse dependencies

Imports Me (1): profileplyr

Suggests Me (4): ComplexHeatmap, epistack, extraChIPs, InteractiveComplexHeatmap