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EnrichDO

a Global Weighted Model for Disease Ontology Enrichment Analysis

Bioconductor version: 3.23 · Package version: 1.6.0

To implement disease ontology (DO) enrichment analysis, this package is designed and presents a double weighted model based on the latest annotations of the human genome with DO terms, by integrating the DO graph topology on a global scale. This package exhibits high accuracy that it can identify more specific DO terms, which alleviates the over enriched problem. The package includes various statistical models and visualization schemes for discovering the associations between genes and diseases from biological big data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnrichDO")

Details

MaintainerHongyu Fu <2287531995@qq.com>
AuthorLiang Cheng [aut], Haixiu Yang [aut], Hongyu Fu [aut, cre]
LicenseMIT + file LICENSE
Downloads rank183
Source branchRELEASE_3_23
biocViewsAnnotation, GeneSetEnrichment, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.0.0)

Imports: BiocGenerics, Rgraphviz, hash, S4Vectors, dplyr, ggplot2, graph, magrittr, methods, pheatmap, graphics, utils, purrr, tidyr, stats

Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle