ERSSA
Empirical RNA-seq Sample Size Analysis
Bioconductor version: 3.23 · Package version: 1.30.0
The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ERSSA")Details
| Maintainer | Zixuan Shao <Zixuanshao.zach@gmail.com> |
| Author | Zixuan Shao [aut, cre] |
| License | GPL-3 | file LICENSE |
| URL | https://github.com/zshao1/ERSSA |
| Downloads rank | 296 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, MultipleComparison, QualityControl, RNASeq, Software, Transcription |
Documentation
Download
Dependencies
Depends: R (>= 4.0.0)
Imports: edgeR (>= 3.23.3), DESeq2 (>= 1.21.16), ggplot2 (>= 3.0.0), RColorBrewer (>= 1.1-2), plyr (>= 1.8.4), BiocParallel (>= 1.15.8), apeglm (>= 1.4.2), grDevices, stats, utils