ENmix

Quality control and analysis tools for Illumina DNA methylation BeadChip

Bioconductor version: 3.23 · Package version: 1.48.3

Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ENmix")

Maintainer	Zongli Xu <xuz@niehs.nih.gov>
Author	Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]
License	Artistic-2.0
URL	https://github.com/Bioconductor/ENmix
Bug Reports	https://github.com/Bioconductor/ENmix/issues
Downloads rank	616
Source branch	RELEASE_3_23
biocViews	BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel

Dependencies

Depends: parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0)

Imports: grDevices, graphics, matrixStats, methods, utils, irlba, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors

Suggests: minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown