EMTscoreData
Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)
Bioconductor version: 3.23 · Package version: 1.0.0
Provides 12 single-cell RNA-seq datasets profiling epithelial–mesenchymal transition (EMT) in human cancer cell lines (MCF7, OVCA420, DU145, and A549) under TGF-beta stimulation, kinase inhibition, and time-course conditions, as reported by Cook DP and Vanderhyden BC (2020). The datasets are distributed via ExperimentHub as SingleCellExperiment objects.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EMTscoreData") Details
| Maintainer | Haimei Wen <hudie.luoluo@gmail.com> |
| Author | Haimei Wen [aut, cre] (ORCID: <https://orcid.org/0009-0006-1600-1210>), Tian Hong [fnd] |
| License | GPL-3 |
| URL | https://github.com/wenmm/EMTscoreData |
| Bug Reports | https://github.com/wenmm/EMTscoreData/issues |
| Downloads rank | 38 |
| Source branch | RELEASE_3_23 |
| biocViews | CancerData, ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData |
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Dependencies
Imports: SummarizedExperiment, Seurat, SingleCellExperiment, AnnotationHub, ExperimentHub, ggplot2
Suggests: BiocFileCache, SeuratObject, knitr, rmarkdown, googledrive, BiocStyle, testthat (>= 3.0.0)