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EMTscoreData

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Bioconductor version: 3.23 · Package version: 1.0.0

Provides 12 single-cell RNA-seq datasets profiling epithelial–mesenchymal transition (EMT) in human cancer cell lines (MCF7, OVCA420, DU145, and A549) under TGF-beta stimulation, kinase inhibition, and time-course conditions, as reported by Cook DP and Vanderhyden BC (2020). The datasets are distributed via ExperimentHub as SingleCellExperiment objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EMTscoreData")

Details

MaintainerHaimei Wen <hudie.luoluo@gmail.com>
AuthorHaimei Wen [aut, cre] (ORCID: <https://orcid.org/0009-0006-1600-1210>), Tian Hong [fnd]
LicenseGPL-3
URLhttps://github.com/wenmm/EMTscoreData
Bug Reportshttps://github.com/wenmm/EMTscoreData/issues
Downloads rank38
Source branchRELEASE_3_23
biocViewsCancerData, ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData

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Dependencies

Imports: SummarizedExperiment, Seurat, SingleCellExperiment, AnnotationHub, ExperimentHub, ggplot2

Suggests: BiocFileCache, SeuratObject, knitr, rmarkdown, googledrive, BiocStyle, testthat (>= 3.0.0)