Dune

Improving replicability in single-cell RNA-Seq cell type discovery

Bioconductor version: 3.23 · Package version: 1.24.0

Given a set of clustering labels, Dune merges pairs of clusters to increase mean ARI between labels, improving replicability.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Dune")

Maintainer	Hector Roux de Bezieux <hector.rouxdebezieux@berkeley.edu>
Author	Hector Roux de Bezieux [aut, cre] (ORCID: <https://orcid.org/0000-0002-1489-8339>), Kelly Street [aut]
License	MIT + file LICENSE
Downloads rank	240
Source branch	RELEASE_3_23
biocViews	Clustering, GeneExpression, RNASeq, SingleCell, Software, Transcriptomics, Visualization

Dependencies

Depends: R (>= 3.6)

Imports: BiocParallel, SummarizedExperiment, utils, ggplot2, dplyr, tidyr, RColorBrewer, magrittr, gganimate, purrr, aricode

Suggests: knitr, rmarkdown, testthat (>= 2.1.0)