DominoEffect
Identification and Annotation of Protein Hotspot Residues
Bioconductor version: 3.23 · Package version: 1.32.0
The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DominoEffect") Details
| Maintainer | Marija Buljan <marija.buljan.2@gmail.com>, Peter Blattmann <peter_blattmann@bluewin.ch> |
| Author | Marija Buljan and Peter Blattmann |
| License | GPL (>= 3) |
| Downloads rank | 292 |
| Source branch | RELEASE_3_23 |
| biocViews | Alignment, Proteomics, SequenceMatching, Software, SomaticMutation |
Documentation
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Dependencies
Depends: R (>= 3.5)
Imports: biomaRt, data.table, utils, stats, Biostrings, pwalign, SummarizedExperiment, VariantAnnotation, AnnotationDbi, Seqinfo, IRanges, GenomicRanges, methods