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DelayedMatrixStats

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Bioconductor version: 3.23 · Package version: 1.34.0

A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DelayedMatrixStats")

Details

MaintainerPeter Hickey <peter.hickey@gmail.com>
AuthorPeter Hickey [aut, cre] (ORCID: <https://orcid.org/0000-0002-8153-6258>), Hervé Pagès [ctb], Aaron Lun [ctb]
LicenseMIT + file LICENSE
URLhttps://github.com/PeteHaitch/DelayedMatrixStats
Bug Reportshttps://github.com/PeteHaitch/DelayedMatrixStats/issues
Downloads rank18364
Source branchRELEASE_3_23
biocViewsDataRepresentation, Infrastructure, Software

Documentation

Download

Dependencies

Depends: MatrixGenerics (>= 1.15.1), DelayedArray (>= 0.31.7)

Imports: methods, sparseMatrixStats (>= 1.13.2), Matrix (>= 1.5-0), S4Vectors (>= 0.17.5), IRanges (>= 2.25.10), SparseArray (>= 1.5.19)

Suggests: testthat, knitr, rmarkdown, BiocStyle, microbenchmark, profmem, HDF5Array, matrixStats (>= 1.0.0)

Reverse dependencies

Imports Me (34): AUCell, batchelor, biscuiteer, bsseq, celldex, Cepo, DeconvoBuddies, dmrseq, dreamlet, DropletUtils, FRASER, glmGamPoi, GSVA, lemur, methrix, methylSig, mia, minfi, mumosa, NetActivity, PCAtools, RBedMethyl, recountmethylation, SCArray, scFeatures, scMerge, scone, Seqtometry, singleCellTK, sparrow, spatialGE, SpliceWiz, SVP, weitrix

Suggests Me (20): blase, ClustAssess, condiments, dandelionR, DelayedArray, escape, EWCE, HDF5Array, MatrixGenerics, mbkmeans, ScaledMatrix, scater, scPCA, scran, scuttle, slingshot, SplineDV, tradeSeq, TrajectoryUtils, Voyager