DelayedMatrixStats
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects
Bioconductor version: 3.23 · Package version: 1.34.0
A port of the 'matrixStats' API for use with DelayedMatrix objects from the 'DelayedArray' package. High-performing functions operating on rows and columns of DelayedMatrix objects, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedMatrixStats") Details
| Maintainer | Peter Hickey <peter.hickey@gmail.com> |
| Author | Peter Hickey [aut, cre] (ORCID: <https://orcid.org/0000-0002-8153-6258>), Hervé Pagès [ctb], Aaron Lun [ctb] |
| License | MIT + file LICENSE |
| URL | https://github.com/PeteHaitch/DelayedMatrixStats |
| Bug Reports | https://github.com/PeteHaitch/DelayedMatrixStats/issues |
| Downloads rank | 18364 |
| Source branch | RELEASE_3_23 |
| biocViews | DataRepresentation, Infrastructure, Software |
Documentation
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Dependencies
Depends: MatrixGenerics (>= 1.15.1), DelayedArray (>= 0.31.7)
Imports: methods, sparseMatrixStats (>= 1.13.2), Matrix (>= 1.5-0), S4Vectors (>= 0.17.5), IRanges (>= 2.25.10), SparseArray (>= 1.5.19)
Suggests: testthat, knitr, rmarkdown, BiocStyle, microbenchmark, profmem, HDF5Array, matrixStats (>= 1.0.0)
Reverse dependencies
Imports Me (34): AUCell, batchelor, biscuiteer, bsseq, celldex, Cepo, DeconvoBuddies, dmrseq, dreamlet, DropletUtils, FRASER, glmGamPoi, GSVA, lemur, methrix, methylSig, mia, minfi, mumosa, NetActivity, PCAtools, RBedMethyl, recountmethylation, SCArray, scFeatures, scMerge, scone, Seqtometry, singleCellTK, sparrow, spatialGE, SpliceWiz, SVP, weitrix
Suggests Me (20): blase, ClustAssess, condiments, dandelionR, DelayedArray, escape, EWCE, HDF5Array, MatrixGenerics, mbkmeans, ScaledMatrix, scater, scPCA, scran, scuttle, slingshot, SplineDV, tradeSeq, TrajectoryUtils, Voyager