DeMixT
Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms
Bioconductor version: 3.23 · Package version: 2.0.0
DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DeMixT")Details
| Maintainer | Ruonan Li <RLi10@mdanderson.org> |
| Author | Zeya Wang [aut], Shaolong Cao [aut], Liyang Xie [aut], Ruonan Li [cre], Wenyi Wang [aut] |
| License | GPL-3 |
| Downloads rank | 333 |
| Source branch | RELEASE_3_23 |
| biocViews | Classification, Coverage, GeneExpression, Microarray, Sequencing, Software, StatisticalMethod, TissueMicroarray |
Documentation
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Dependencies
Depends: R (>= 4.0.0), parallel, Rcpp (>= 1.0.0), SummarizedExperiment
Imports: matrixStats, stats, truncdist, base64enc, ggplot2, KernSmooth, matrixcalc, sva, dendextend, fitdistrplus, pbapply, psych, magrittr, graphics, grDevices, S4Vectors
LinkingTo: Rcpp