DOtools
Convenient functions to streamline your single cell data analysis workflow
Bioconductor version: 3.23 · Package version: 1.2.0
This package provides functions for creating various visualizations, convenient wrappers, and quality-of-life utilities for single cell experiment objects. It offers a streamlined approach to visualize results and integrates different tools for easy use.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DOtools")Details
| Maintainer | Mariano Ruz Jurado <ruzjurado@med.uni-frankfurt.de> |
| Author | Mariano Ruz Jurado [aut, cre] (ORCID: <https://orcid.org/0000-0001-5354-5336>), David Rodriguez Morales [aut] (ORCID: <https://orcid.org/0000-0002-1819-6991>), David John [aut] (ORCID: <https://orcid.org/0000-0003-3217-5449>), DFG SFB 1366, Project B04 [fnd], DFG SFB 1531, Project 456687919 [fnd] |
| License | MIT + file LICENSE |
| URL | https://marianoruzjurado.github.io/DOtools/ |
| Bug Reports | https://github.com/MarianoRuzJurado/DOtools/issues |
| Downloads rank | 107 |
| Source branch | RELEASE_3_23 |
| biocViews | Annotation, Clustering, GeneExpression, QualityControl, RNASeq, SingleCell, Software, Visualization, WorkflowStep |
Documentation
Download
Dependencies
Depends: R (>= 4.5.0)
Imports: Seurat (>= 5.2.0), SeuratObject (>= 5.1.0), ggplot2 (>= 3.5.0), ggpubr (>= 0.6.0), ggtext (>= 0.1.2), ggalluvial (>= 0.12.5), ggrastr (>= 1.0.2), tidyverse (>= 2.0.0), reshape2 (>= 1.4.4), dplyr (>= 1.1.4), tidyr (>= 1.3.1), rstatix (>= 0.7.2), cowplot (>= 1.1.3), reticulate (>= 1.41.0.1), zellkonverter (>= 1.16.0), progress (>= 1.2.3), ggiraphExtra (>= 0.3.0), grid (>= 4.4.3), SCpubr (>= 2.0.2), DropletUtils (>= 1.26.0), scCustomize (>= 3.0.1), openxlsx (>= 4.2.8), tibble (>= 3.2.1), scDblFinder (>= 1.20.0), ggcorrplot (>= 0.1.4.1), DESeq2 (>= 1.48.1), enrichR (>= 3.4), cli (>= 3.6.5), curl (>= 6.3.0), magrittr (>= 2.0.3), Matrix (>= 1.7.3), purrr (>= 1.0.4), rlang (>= 1.1.6), scales (>= 1.4.0), SingleCellExperiment (>= 1.30.1), S4Vectors (>= 0.46.0), basilisk (>= 1.20.0), FNN (>= 1.1.4.1), ks, methods, stats, utils
Suggests: SummarizedExperiment, knitr, kableExtra, pkgdown, RefManageR, BiocStyle, roxygen2, httr, magick, rmarkdown, assertthat, plyr, rsvg, scran, scater, igraph, sessioninfo, testthat (>= 3.0.0), leidenbase (>= 0.1.36), mockery