DNAcycP2
DNA Cyclizability Prediction
Bioconductor version: 3.23 · Package version: 1.4.1
This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNAcycP2") Details
| Maintainer | Ji-Ping Wang <jzwang@northwestern.edu> |
| Author | Brody Kendall [aut], Keren Li [aut], Ji-Ping Wang [aut, cre] (ORCID: <https://orcid.org/0000-0002-8398-939X>) |
| License | Artistic-2.0 |
| URL | https://github.com/jipingw/DNAcycP2 |
| Bug Reports | https://github.com/jipingw/DNAcycP2 |
| Downloads rank | 149 |
| Source branch | RELEASE_3_23 |
| biocViews | NeuralNetwork, Software, StructuralPrediction |
Documentation
Download
Dependencies
Depends: R (>= 4.4.0)
Imports: basilisk, reticulate
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle, Biostrings