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DExMA

Differential Expression Meta-Analysis

Bioconductor version: 3.23 · Package version: 1.20.0

performing all the steps of gene expression meta-analysis considering the possible existence of missing genes. It provides the necessary functions to be able to perform the different methods of gene expression meta-analysis. In addition, it contains functions to apply quality controls, download GEO datasets and show graphical representations of the results.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DExMA")

Details

MaintainerJuan Antonio Villatoro-García <juanantoniovillatorogarcia@gmail.com>
AuthorJuan Antonio Villatoro-García [aut, cre], Pedro Carmona-Sáez [aut]
LicenseGPL-2
Downloads rank270
Source branchRELEASE_3_23
biocViewsDifferentialExpression, GeneExpression, QualityControl, Software, StatisticalMethod

Documentation

Download

Dependencies

Depends: R (>= 4.1), DExMAdata

Imports: Biobase, GEOquery, impute, limma, pheatmap, plyr, scales, snpStats, sva, swamp, stats, methods, utils, bnstruct, RColorBrewer, grDevices

Suggests: BiocStyle, qpdf, BiocGenerics, RUnit