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DELocal

Identifies differentially expressed genes with respect to other local genes

Bioconductor version: 3.23 · Package version: 1.12.0

The goal of DELocal is to identify DE genes compared to their neighboring genes from the same chromosomal location. It has been shown that genes of related functions are generally very far from each other in the chromosome. DELocal utilzes this information to identify DE genes comparing with their neighbouring genes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DELocal")

Details

MaintainerRishi Das Roy <rishi.dasroy@gmail.com>
AuthorRishi Das Roy [aut, cre] (ORCID: <https://orcid.org/0000-0002-3276-7279>)
LicenseMIT + file LICENSE
URLhttps://github.com/dasroy/DELocal
Bug Reportshttps://github.com/dasroy/DELocal/issues
Downloads rank188
Source branchRELEASE_3_23
biocViewsDifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics

Documentation

Download

Dependencies

Imports: DESeq2, dplyr, reshape2, limma, SummarizedExperiment, ggplot2, matrixStats, stats

Suggests: biomaRt, knitr, rmarkdown, stringr, BiocStyle

Reverse dependencies

Imports Me (1): broadSeq