DELocal
Identifies differentially expressed genes with respect to other local genes
Bioconductor version: 3.23 · Package version: 1.12.0
The goal of DELocal is to identify DE genes compared to their neighboring genes from the same chromosomal location. It has been shown that genes of related functions are generally very far from each other in the chromosome. DELocal utilzes this information to identify DE genes comparing with their neighbouring genes.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DELocal") Details
| Maintainer | Rishi Das Roy <rishi.dasroy@gmail.com> |
| Author | Rishi Das Roy [aut, cre] (ORCID: <https://orcid.org/0000-0002-3276-7279>) |
| License | MIT + file LICENSE |
| URL | https://github.com/dasroy/DELocal |
| Bug Reports | https://github.com/dasroy/DELocal/issues |
| Downloads rank | 188 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics |
Documentation
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Dependencies
Imports: DESeq2, dplyr, reshape2, limma, SummarizedExperiment, ggplot2, matrixStats, stats
Reverse dependencies
Imports Me (1): broadSeq