DEGreport
Report of DEG analysis
Bioconductor version: 3.23 · Package version: 1.48.0
Creation of ready-to-share figures of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DEGreport")Details
| Maintainer | Lorena Pantano <lorena.pantano@gmail.com> |
| Author | Lorena Pantano [aut, cre], John Hutchinson [ctb], Victor Barrera [ctb], Mary Piper [ctb], Radhika Khetani [ctb], Kenneth Daily [ctb], Thanneer Malai Perumal [ctb], Rory Kirchner [ctb], Michael Steinbaugh [ctb], Ivo Zeller [ctb] |
| License | MIT + file LICENSE |
| URL | http://lpantano.github.io/DEGreport/ |
| Bug Reports | https://github.com/lpantano/DEGreport/issues |
| Downloads rank | 869 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, ReportWriting, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.0.0)
Imports: utils, methods, Biobase, BiocGenerics, broom, circlize, ComplexHeatmap, cowplot, ConsensusClusterPlus, cluster, dendextend, DESeq2, dplyr, edgeR, ggplot2, ggdendro, grid, ggrepel, grDevices, knitr, logging, magrittr, psych, RColorBrewer, reshape, rlang, scales, stats, stringr, stringi, S4Vectors, SummarizedExperiment, tidyr, tibble
Suggests: BiocStyle, AnnotationDbi, limma, pheatmap, rmarkdown, statmod, testthat