CytoPipelineGUI
GUI's for visualization of flow cytometry data analysis pipelines
Bioconductor version: 3.23 · Package version: 1.10.0
This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CytoPipelineGUI")Details
| Maintainer | Philippe Hauchamps <philippe.hauchamps@uclouvain.be> |
| Author | Philippe Hauchamps [aut, cre] (ORCID: <https://orcid.org/0000-0003-2865-1852>), Laurent Gatto [aut] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Dan Lin [ctb] |
| License | GPL-3 |
| URL | https://uclouvain-cbio.github.io/CytoPipelineGUI |
| Bug Reports | https://github.com/UCLouvain-CBIO/CytoPipelineGUI/issues |
| Downloads rank | 192 |
| Source branch | RELEASE_3_23 |
| biocViews | FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep |
Documentation
- CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline
- Demonstration of the CytoPipeline R package suite functionalities
Download
Dependencies
Depends: R (>= 4.4), CytoPipeline (>= 1.9.3)
Imports: shiny, plotly, ggplot2, flowCore
Suggests: testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork
Reverse dependencies
Suggests Me (1): CytoPipeline