CyTOFpower
Power analysis for CyTOF experiments
Bioconductor version: 3.23 · Package version: 1.18.1
This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CyTOFpower") Details
| Maintainer | Anne-Maud Ferreira <anne-maud.ferreira@epfedu.fr> |
| Author | Anne-Maud Ferreira [cre, aut] (ORCID: <https://orcid.org/0000-0002-4749-746X>), Catherine Blish [aut], Susan Holmes [aut] |
| License | LGPL-3 |
| Downloads rank | 214 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod |
Documentation
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Dependencies
Depends: R (>= 4.1)
Imports: CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr
Suggests: testthat (>= 3.0.0), BiocStyle, knitr