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CyTOFpower

Power analysis for CyTOF experiments

Bioconductor version: 3.23 · Package version: 1.18.1

This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CyTOFpower")

Details

MaintainerAnne-Maud Ferreira <anne-maud.ferreira@epfedu.fr>
AuthorAnne-Maud Ferreira [cre, aut] (ORCID: <https://orcid.org/0000-0002-4749-746X>), Catherine Blish [aut], Susan Holmes [aut]
LicenseLGPL-3
Downloads rank214
Source branchRELEASE_3_23
biocViewsCellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod

Documentation

Download

Dependencies

Depends: R (>= 4.1)

Imports: CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr

Suggests: testthat (>= 3.0.0), BiocStyle, knitr