ConnectivityMap

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Bioconductor version: 3.23 · Package version: 1.48.0

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ConnectivityMap")