ComplexHeatmap

Make Complex Heatmaps

Bioconductor version: 3.23 · Package version: 2.28.0

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComplexHeatmap")

Details

Maintainer	Zuguang Gu <guzuguang@suat-sz.edu.cn>
Author	Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)
License	MIT + file LICENSE
URL	https://github.com/jokergoo/ComplexHeatmap, https://jokergoo.github.io/ComplexHeatmap-reference/book/
Downloads rank	22352
Source branch	RELEASE_3_23
biocViews	Sequencing, Software, Visualization

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.0.0), methods, grid, graphics, stats, grDevices

Imports: circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools

Suggests: testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick

Reverse dependencies

Depends On Me (6): AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, multistateQTL, recoup, sechm

Imports Me (130): airpart, ASURAT, autoGO, barbieQ, bettr, BindingSiteFinder, BioNERO, blacksheepr, blisa, BloodGen3Module, BreastSubtypeR, BulkSignalR, CATALYST, CCPlotR, celda, cellGeometry, CellWindX, CeTF, chevreulPlot, chevreulShiny, ClustAll, COCOA, coda4microbiome, cola, conos, COTAN, CRISPRball, CTexploreR, cytoKernel, damidBind, Damsel, dar, DEGreport, DeSciDe, diffcyt, diffUTR, dinoR, dominoSignal, dtGAP, ELMER, ELViS, epiregulon.extra, fCCAC, FLAMES, GAPR, gCrisprTools, GeDi, GeneTonic, GenomicPlot, GenomicSuperSignature, geyser, gINTomics, gmoviz, goatea, GRaNIE, GSSTDA, gVenn, hermes, hoodscanR, HybridExpress, iModMix, InterCellar, iSEE, karyotapR, MAPFX, markeR, MatrixQCvis, MesKit, MetaHD, mineSweepR, missoNet, MitoHEAR, mitology, MKomics, MOMA, monaLisa, Moonlight2R, MOSClip, MPAC, MultiRNAflow, muscat, musicatk, MWASTools, nipalsMCIA, ogrdbstats, Path.Analysis, pathlinkR, PathoStat, PCAPAM50, PeacoQC, pipeComp, pkgndep, POMA, profileplyr, PRONE, rCISSVAE, RepeatedHighDim, RFLOMICS, RiboCrypt, rKOMICS, RNAseqQC, RNAshapeQC, RUCova, scafari, scITD, scRNAseqApp, segmenter, shinyDSP, signifinder, simona, simplifyEnrichment, SingleCellComplexHeatMap, SingleCellSignalR, singleCellTK, sparrow, spatialGE, spatialLIBD, spiralize, SPONGE, StatescopeR, TBSignatureProfiler, thisplot, tidyHeatmap, TMSig, TransProR, ViSEAGO, visxhclust, wilson, Xeva, YAPSA

Suggests Me (61): artMS, bambu, BeeBDC, CIARA, circlize, circlizePlus, ClustAssess, ClusterGVis, clustifyr, CNVRanger, CNVScope, ConsensusOPLS, Coralysis, curatedPCaData, demuxSNP, diffHTS, dittoSeq, EnrichmentBrowser, FlowSOM, ggbond, ggpicrust2, glydraw, grandR, GRIN2, gtrellis, HilbertCurve, inferCSN, IOBR, LegATo, mastR, metasnf, miaViz, msImpute, msqrob2, multipanelfigure, NanoporeRNASeq, pepdiff, piglet, plotgardener, plotthis, projectR, ProteinGymR, QFeatures, raer, rliger, scCustomize, scDblFinder, scDiagnostics, scLANE, SCpubr, SeuratExplorer, sfcurve, singleCellHaystack, SpaceMarkers, SPIAT, SRscore, TCGAbiolinks, TCGAutils, tinyarray, VISTA, weitrix