ComPrAn

Complexome Profiling Analysis package

Bioconductor version: 3.23 · Package version: 1.20.0

This package is for analysis of SILAC labeled complexome profiling data. It uses peptide table in tab-delimited format as an input and produces ready-to-use tables and plots.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ComPrAn")

Details

Maintainer	Petra Palenikova <palenikova3@gmail.com>
Author	Rick Scavetta [aut], Petra Palenikova [aut, cre] (ORCID: <https://orcid.org/0000-0002-2465-4370>)
License	MIT + file LICENSE
Downloads rank	193
Source branch	RELEASE_3_23
biocViews	MassSpectrometry, Proteomics, Software, Visualization

Documentation

Input File Description
Protein workflow
SILAC complexomics

Download

Source package

Dependencies

Imports: data.table, dplyr, forcats, ggplot2, magrittr, purrr, tidyr, rlang, stringr, shiny, DT, RColorBrewer, VennDiagram, rio, scales, shinydashboard, shinyjs, stats, tibble, grid

Suggests: testthat (>= 2.1.0), knitr, rmarkdown