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Cogito

Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Bioconductor version: 3.23 · Package version: 1.18.0

Biological studies often consist of multiple conditions which are examined with different laboratory set ups like RNA-sequencing or ChIP-sequencing. To get an overview about the whole resulting data set, Cogito provides an automated, complete, reproducible and clear report about all samples and basic comparisons between all different samples. This report can be used as documentation about the data set or as starting point for further custom analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Cogito")

Details

MaintainerAnnika Bürger <a.buerger@uni-muenster.de>
AuthorAnnika Bürger [cre, aut]
LicenseLGPL-3
Downloads rank238
Source branchRELEASE_3_23
biocViewsFunctionalGenomics, GeneRegulation, Sequencing, Software

Documentation

Download

Dependencies

Depends: R (>= 4.1), GenomicRanges, jsonlite, GenomicFeatures, entropy

Imports: BiocManager, rmarkdown, Seqinfo, S4Vectors, AnnotationDbi, graphics, stats, utils, methods, magrittr, ggplot2, TxDb.Mmusculus.UCSC.mm9.knownGene

Suggests: BiocStyle, knitr, markdown, testthat (>= 3.0.0)