ChemmineR
Cheminformatics Toolkit for R
Bioconductor version: 3.23 · Package version: 3.64.0
ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R. Its latest version contains functions for efficient processing of large numbers of molecules, physicochemical/structural property predictions, structural similarity searching, classification and clustering of compound libraries with a wide spectrum of algorithms. In addition, it offers visualization functions for compound clustering results and chemical structures.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChemmineR") Details
| Maintainer | Thomas Girke <thomas.girke@ucr.edu> |
| Author | Y. Eddie Cao, Kevin Horan, Tyler Backman, Thomas Girke |
| License | Artistic-2.0 |
| URL | https://github.com/girke-lab/ChemmineR |
| System Requirements | GNU make |
| Downloads rank | 1256 |
| Source branch | RELEASE_3_23 |
| biocViews | BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization |
Documentation
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Dependencies
Depends: R (>= 2.10.0), methods
Imports: rjson, graphics, stats, RCurl, DBI, digest, BiocGenerics, Rcpp (>= 0.11.0), ggplot2, grid, gridExtra, png, base64enc, DT, rsvg, jsonlite, stringi
Suggests: RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL, BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineDrugs, png, rmarkdown, BiocManager, bibtex, codetools
Enhances: ChemmineOB
Reverse dependencies
Depends On Me (3): ChemmineDrugs, eiR, fmcsR
Imports Me (9): bioassayR, chemodiv, CompoundDb, customCMPdb, eiR, fmcsR, MetID, RMassBank, SubtypeDrug
Suggests Me (2): ChemmineOB, xnet