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ChemmineR

Cheminformatics Toolkit for R

Bioconductor version: 3.23 · Package version: 3.64.0

ChemmineR is a cheminformatics package for analyzing drug-like small molecule data in R. Its latest version contains functions for efficient processing of large numbers of molecules, physicochemical/structural property predictions, structural similarity searching, classification and clustering of compound libraries with a wide spectrum of algorithms. In addition, it offers visualization functions for compound clustering results and chemical structures.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChemmineR")

Details

MaintainerThomas Girke <thomas.girke@ucr.edu>
AuthorY. Eddie Cao, Kevin Horan, Tyler Backman, Thomas Girke
LicenseArtistic-2.0
URLhttps://github.com/girke-lab/ChemmineR
System RequirementsGNU make
Downloads rank1256
Source branchRELEASE_3_23
biocViewsBiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 2.10.0), methods

Imports: rjson, graphics, stats, RCurl, DBI, digest, BiocGenerics, Rcpp (>= 0.11.0), ggplot2, grid, gridExtra, png, base64enc, DT, rsvg, jsonlite, stringi

LinkingTo: Rcpp, BH

Suggests: RSQLite, scatterplot3d, gplots, fmcsR, snow, RPostgreSQL, BiocStyle, knitr, knitcitations, knitrBootstrap, ChemmineDrugs, png, rmarkdown, BiocManager, bibtex, codetools

Enhances: ChemmineOB

Reverse dependencies

Depends On Me (3): ChemmineDrugs, eiR, fmcsR

Imports Me (9): bioassayR, chemodiv, CompoundDb, customCMPdb, eiR, fmcsR, MetID, RMassBank, SubtypeDrug

Suggests Me (2): ChemmineOB, xnet