ChIPQC
Quality metrics for ChIPseq data
Bioconductor version: 3.23 · Package version: 1.48.3
Quality metrics for ChIPseq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChIPQC")Details
| Maintainer | Tom Carroll <tc.infomatics@gmail.com>, Rory Stark <bioconductor@starkhome.com> |
| Author | Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark |
| License | GPL (>= 3) |
| Downloads rank | 596 |
| Source branch | RELEASE_3_23 |
| biocViews | ChIPSeq, QualityControl, ReportWriting, Sequencing, Software |
Documentation
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Dependencies
Depends: R (>= 3.5.0), ggplot2, DiffBind, GenomicRanges (>= 1.17.19), BiocParallel
Imports: BiocGenerics (>= 0.11.3), S4Vectors (>= 0.1.0), IRanges (>= 1.99.17), Rsamtools (>= 1.17.28), GenomicAlignments (>= 1.1.16), chipseq (>= 1.12.0), gtools, methods, reshape2, Biobase, grDevices, stats, utils, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg18.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Rnorvegicus.UCSC.rn4.ensGene, TxDb.Celegans.UCSC.ce6.ensGene, TxDb.Dmelanogaster.UCSC.dm3.ensGene
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