ChIPDBData

ChIP-seq Target Databases for TFEA.ChIP

Bioconductor version: 3.23 · Package version: 1.2.0

Provides curated gene target databases derived from ChIP-seq datasets, formatted as ChIPDB objects for use with TFEA.ChIP.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ChIPDBData")

Maintainer	Yosra Berrouayel <yosraberrouayel@gmail.com>
Author	Yosra Berrouayel [aut, cre] (ORCID: <https://orcid.org/0000-0002-0768-5933>), Luis del Peso [aut] (ORCID: <https://orcid.org/0000-0003-4014-5688>)
License	GPL-3
URL	https://github.com/yberda/ChIPDBData
Bug Reports	https://github.com/yberda/ChIPDBData/issues
Downloads rank	71
Source branch	RELEASE_3_23
biocViews	ENCODE, ExperimentData, ExperimentHub, Homo_sapiens_Data, SequencingData

Dependencies

Imports: ExperimentHub

Suggests: knitr, rmarkdown, BiocStyle, AnnotationHub, TFEA.ChIP, DESeq2, testthat (>= 3.0.0)