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CalibraCurve

Calibration curves for targeted proteomics, lipidomics and metabolomics data

Bioconductor version: 3.23 · Package version: 1.2.0

CalibraCurve is a computational tool designed to generate calibration curves for targeted mass spectrometry-based quantitative data. It is applicable to various omics disciplines, including proteomics, lipidomics, and metabolomics. The package also offers functionalities for data and calibration curve visualization and concentration prediction from new datasets based on the established curves.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CalibraCurve")

Details

MaintainerKarin Schork <karin.schork@rub.de>
AuthorKarin Schork [aut, cre] (ORCID: <https://orcid.org/0000-0003-3756-4347>), Robin Grugel [aut], Michael Kohl [aut], Markus Stepath [aut], Martin Eisenacher [aut, fnd]
LicenseBSD 3-clause License + file LICENSE
URLhttps://github.com/mpc-bioinformatics/CalibraCurve
Bug Reportshttps://github.com/mpc-bioinformatics/CalibraCurve/issues
Downloads rank122
Source branchRELEASE_3_23
biocViewsLipidomics, MassSpectrometry, Metabolomics, Proteomics, Regression, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: checkmate, dplyr, ggplot2, magrittr, openxlsx, scales, SummarizedExperiment, tidyr

Suggests: BiocStyle, knitr, msqc1, RefManageR, rmarkdown, sessioninfo, testthat, vdiffr