CTdata

Data companion to CTexploreR

Bioconductor version: 3.23 · Package version: 1.12.0

Data from publicly available databases (GTEx, CCLE, TCGA and ENCODE) that go with CTexploreR in order to re-define a comprehensive and thoroughly curated list of CT genes and their main characteristics.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTdata")

Details

Maintainer	Laurent Gatto <laurent.gatto@uclouvain.be>
Author	Axelle Loriot [aut] (ORCID: <https://orcid.org/0000-0002-5288-8561>), Julie Devis [aut] (ORCID: <https://orcid.org/0000-0001-5525-5666>), Anna Diacofotaki [ctb], Charles De Smet [ths], Laurent Gatto [aut, ths, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>)
License	Artistic-2.0
Bug Reports	https://github.com/UCLouvain-CBIO/CTdata/issues
Downloads rank	214
Source branch	RELEASE_3_23
biocViews	DataImport, Epigenetics, ExperimentHubSoftware, GeneExpression, Software, Transcriptomics

Download

Source package

Dependencies

Depends: R (>= 4.2)

Imports: ExperimentHub, utils

Suggests: testthat (>= 3.0.0), DT, BiocStyle, knitr, rmarkdown, SummarizedExperiment, SingleCellExperiment

Reverse dependencies

Depends On Me (1): CTexploreR