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CTDquerier

Package for CTDbase data query, visualization and downstream analysis

Bioconductor version: 3.23 · Package version: 2.20.0

Package to retrieve and visualize data from the Comparative Toxicogenomics Database (http://ctdbase.org/). The downloaded data is formated as DataFrames for further downstream analyses.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CTDquerier")

Details

MaintainerXavier EscribĂ -Montagut <xavier.escriba@isglobal.org>
AuthorCarles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut], Xavier EscribĂ -Montagut [cre]
LicenseMIT + file LICENSE
Downloads rank453
Source branchRELEASE_3_23
biocViewsBiomedicalInformatics, DataImport, DataRepresentation, GO, GeneSetEnrichment, Infrastructure, KEGG, Network, NetworkEnrichment, Pathways, Software

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Dependencies

Depends: R (>= 4.1)

Imports: RCurl, stringr, S4Vectors, stringdist, ggplot2, igraph, utils, grid, gridExtra, methods, stats, BiocFileCache

Suggests: BiocStyle, knitr, rmarkdown