CSSQ
Chip-seq Signal Quantifier Pipeline
Bioconductor version: 3.23 · Package version: 1.24.0
This package is desgined to perform statistical analysis to identify statistically significant differentially bound regions between multiple groups of ChIP-seq dataset.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CSSQ")Details
| Maintainer | Fan Lab at Georgia Institute of Technology <yuhong.fan@biology.gatech.edu> |
| Author | Ashwath Kumar [aut], Michael Y Hu [aut], Yajun Mei [aut], Yuhong Fan [aut] |
| License | Artistic-2.0 |
| Downloads rank | 298 |
| Source branch | RELEASE_3_23 |
| biocViews | ChIPSeq, DifferentialPeakCalling, Normalization, Sequencing, Software |
Documentation
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Dependencies
Depends: SummarizedExperiment, GenomicRanges, IRanges, S4Vectors, rtracklayer
Imports: GenomicAlignments, GenomicFeatures, Rsamtools, ggplot2, grDevices, stats, utils