CRISPRball

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Bioconductor version: 3.23 · Package version: 1.8.0

A Shiny application for visualization, exploration, comparison, and filtering of CRISPR screens analyzed with MAGeCK RRA or MLE. Features include interactive plots with on-click labeling, full customization of plot aesthetics, data upload and/or download, and much more. Quickly and easily explore your CRISPR screen results and generate publication-quality figures in seconds.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CRISPRball")

Details

Maintainer	Jared Andrews <jared.andrews07@gmail.com>
Author	Jared Andrews [aut, cre] (ORCID: <https://orcid.org/0000-0002-0780-6248>), Jacob Steele [ctb] (ORCID: <https://orcid.org/0000-0001-9924-2226>)
License	MIT + file LICENSE
URL	https://github.com/j-andrews7/CRISPRball
Bug Reports	https://support.bioconductor.org/
Downloads rank	154
Source branch	RELEASE_3_23
biocViews	CRISPR, GUI, QualityControl, ShinyApps, Software, Visualization

Documentation

CRISPRball Quick Start

Download

Source package

Dependencies

Depends: R (>= 4.4.0), shinyBS

Imports: DT, shiny, grid, ComplexHeatmap, InteractiveComplexHeatmap, graphics, stats, ggplot2, plotly, shinyWidgets, shinycssloaders, shinyjqui, dittoSeq, matrixStats, colourpicker, shinyjs, circlize, PCAtools, utils, grDevices, htmlwidgets, methods

Suggests: BiocStyle, msigdbr, depmap, pool, RSQLite, mygene, testthat (>= 3.0.0), knitr, rmarkdown