CNViz

Copy Number Visualization

Bioconductor version: 3.23 · Package version: 1.20.0

CNViz takes probe, gene, and segment-level log2 copy number ratios and launches a Shiny app to visualize your sample's copy number profile. You can also integrate loss of heterozygosity (LOH) and single nucleotide variant (SNV) data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNViz")

Details

Maintainer	Rebecca Greenblatt <rebecca.greenblatt@gmail.com>
Author	Rebecca Greenblatt [aut, cre]
License	Artistic-2.0
Downloads rank	207
Source branch	RELEASE_3_23
biocViews	CopyNumberVariation, DNASeq, Sequencing, Software, Visualization

Documentation

CNViz

Download

Source package

Dependencies

Depends: R (>= 4.0), shiny (>= 1.5.0)

Imports: dplyr, stats, utils, grDevices, plotly, karyoploteR, CopyNumberPlots, GenomicRanges, magrittr, DT, scales, graphics

Suggests: rmarkdown, knitr