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CHRONOS

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

Bioconductor version: 3.23 · Package version: 1.40.0

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CHRONOS")

Details

MaintainerPanos Balomenos <balomenos@upatras.gr>
AuthorAristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos
LicenseGPL-2
System RequirementsJava version >= 1.7, Pandoc
Downloads rank309
Source branchRELEASE_3_23
biocViewsGraphAndNetwork, KEGG, Pathways, Software, SystemsBiology

Documentation

Download

Dependencies

Depends: R (>= 3.5)

Imports: XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava

Suggests: RUnit, BiocGenerics, knitr, rmarkdown