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CENTREprecomputed

Hub package for the precomputed data of CENTRE and example data

Bioconductor version: 3.23 · Package version: 1.2.0

Interface and documentation for the Experiment Hub records needed by the CENTRE Bioconductor software package. The Experiment Hub records contains the precomputed fisher combined p-values, CRUP correlations. Additionally, the records hold ChIP-seq and RNA-seq data used for the example of the software package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CENTREprecomputed")

Details

MaintainerSara Lopez Ruiz de Vargas <lopez_s@molgen.mpg.de>
AuthorSara Lopez Ruiz de Vargas [aut, cre] (ORCID: <https://orcid.org/0000-0002-1290-4774>)
LicenseArtistic-2.0
URLhttps://github.com/slrvv/CENTREprecomputed
Bug Reportshttps://github.com/slrvv/CENTREprecomputed/issues
Downloads rank70
Source branchRELEASE_3_23
biocViewsChIPSeqData, ChipOnChipData, ExperimentData, ExperimentHub, PackageTypeData, RNASeqData

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Dependencies

Depends: R (>= 4.5.0)

Imports: ExperimentHub, RSQLite, DBI, BiocGenerics, methods

Suggests: knitr, rmarkdown, testthat, BiocStyle