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CCPlotR

Plots For Visualising Cell-Cell Interactions

Bioconductor version: 3.23 · Package version: 1.10.0

CCPlotR is an R package for visualising results from tools that predict cell-cell interactions from single-cell RNA-seq data. These plots are generic and can be used to visualise results from multiple tools such as Liana, CellPhoneDB, NATMI etc.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCPlotR")

Details

MaintainerSarah Ennis <ennissarah94@gmail.com>
AuthorSarah Ennis [aut, cre] (ORCID: <https://orcid.org/0000-0001-6100-8573>), Pilib Ó Broin [aut], Eva Szegezdi [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/Sarah145/CCPlotR
Bug Reportshttps://github.com/Sarah145/CCPlotR/issues
Downloads rank228
Source branchRELEASE_3_23
biocViewsCellBiology, Network, SingleCell, Software, SystemsBiology, Visualization

Documentation

Download

Dependencies

Imports: plyr, tidyr, dplyr, ggplot2, forcats, ggraph, igraph, scatterpie, circlize, ComplexHeatmap, tibble, grid, stringr, ggtext, ggh4x, patchwork, RColorBrewer, scales, viridis, grDevices, graphics, stats, methods

Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)