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CCAFE

Case Control Allele Frequency Estimation

Bioconductor version: 3.23 · Package version: 1.4.0

Functions to reconstruct case and control AFs from summary statistics. One function uses OR, NCase, NControl, and SE(log(OR)). The second function uses OR, NCase, NControl, and AF for the whole sample.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CCAFE")

Details

MaintainerHayley Wolff <hayley.wolff@cuanschutz.edu>
AuthorHayley Wolff [cre, aut]
LicenseGPL-3
URLhttps://github.com/wolffha/CCAFE/
Bug Reportshttps://github.com/wolffha/CCAFE/issues
Downloads rank167
Source branchRELEASE_3_23
biocViewsComparativeGenomics, Genetics, GenomeWideAssociation, Preprocessing, SNP, Software, WholeGenome

Documentation

Download

Dependencies

Depends: R (>= 4.4.0)

Imports: dplyr, VariantAnnotation

Suggests: testthat (>= 3.0.0), rmarkdown, markdown, knitr, tidyverse, DescTools, cowplot, BiocStyle, GenomicRanges, SummarizedExperiment, S4Vectors, IRanges