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CBNplot

plot bayesian network inferred from gene expression data based on enrichment analysis results

Bioconductor version: 3.23 · Package version: 1.12.0

This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CBNplot")

Details

MaintainerNoriaki Sato <nori@hgc.jp>
AuthorNoriaki Sato [cre, aut]
LicenseArtistic-2.0
URLhttps://github.com/noriakis/CBNplot
Bug Reportshttps://github.com/noriakis/CBNplot/issues
Downloads rank273
Source branchRELEASE_3_23
biocViewsBayesian, GeneExpression, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, Pathways, Reactome, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.3.0)

Imports: ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork, org.Hs.eg.db, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang

Suggests: knitr, arules, concaveman, ReactomePA, bnviewer, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)