CBNplot
plot bayesian network inferred from gene expression data based on enrichment analysis results
Bioconductor version: 3.23 · Package version: 1.12.0
This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CBNplot") Details
| Maintainer | Noriaki Sato <nori@hgc.jp> |
| Author | Noriaki Sato [cre, aut] |
| License | Artistic-2.0 |
| URL | https://github.com/noriakis/CBNplot |
| Bug Reports | https://github.com/noriakis/CBNplot/issues |
| Downloads rank | 273 |
| Source branch | RELEASE_3_23 |
| biocViews | Bayesian, GeneExpression, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, Pathways, Reactome, Software, Visualization |
Documentation
Download
Dependencies
Depends: R (>= 4.3.0)
Imports: ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork, org.Hs.eg.db, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang
Suggests: knitr, arules, concaveman, ReactomePA, bnviewer, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)