CBN2Path
CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks
Bioconductor version: 3.23 · Package version: 1.2.0
CBN2Path package provides a unifying interface to facilitate CBN-based quantification, analysis and visualization of cancer progression pathways.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CBN2Path")Details
| Maintainer | William Choi-Kim <william@williamck.com>, Sayed-Rzgar Hosseini <razgar@gmail.com> |
| Author | William Choi-Kim [aut, cre], Sayed-Rzgar Hosseini [aut, cre] |
| License | MIT + file LICENSE |
| URL | https://github.com/rockwillck/CBN2Path, http://dx.doi.org/10.1093/biomet/asp023, http://dx.doi.org/10.1093/bioinformatics/btp505 |
| Bug Reports | https://github.com/rockwillck/CBN2Path/issues |
| System Requirements | GNU Scientific Library (GSL) |
| Downloads rank | 107 |
| Source branch | RELEASE_3_23 |
| biocViews | Bayesian, GraphAndNetwork, Pathways, Software, StatisticalMethod |
Documentation
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: R6, ggraph, tidygraph, ggplot2, patchwork, cowplot, magrittr, igraph, rlang, grDevices, coda, graphics, stats, TCGAbiolinks, BiocParallel
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown