CAMERA

Collection of annotation related methods for mass spectrometry data

Bioconductor version: 3.23 · Package version: 1.68.0

Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CAMERA")

Details

Maintainer	Steffen Neumann <sneumann@ipb-halle.de>
Author	Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl\|htreutle\|sneumann}@ipb-halle.de, rtautenh@scripps.edu
License	GPL (>= 2)
URL	http://msbi.ipb-halle.de/msbi/CAMERA/
Bug Reports	https://github.com/sneumann/CAMERA/issues/new
Downloads rank	937
Source branch	RELEASE_3_23
biocViews	ImmunoOncology, MassSpectrometry, Metabolomics, Software

Documentation

Download

Source package

Dependencies

Depends: R (>= 3.5.0), methods, Biobase, xcms (>= 1.13.5)

Imports: methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph

Suggests: faahKO, RUnit, BiocGenerics, multtest

Enhances: Rmpi, snow

Reverse dependencies

Depends On Me (6): flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids

Suggests Me (4): cliqueMS, msPurity, mtbls2, RMassBank