BiocStyle

Depends On Me (12): curatedBreastData, cytofWorkflow, ExpressionAtlas, iNETgrate, methylationArrayAnalysis, netresponse, org.Mxanthus.db, Pigengene, rnaseqGene, RnaSeqGeneEdgeRQL, RPA, sangeranalyseR

Imports Me (40): abseqR, ASpli, bandle, BiocWorkflowTools, BioGA, BPRMeth, broadSeq, BubbleTree, chimeraviz, COMPASS, COTAN, DiscoRhythm, EasyCellType, EZtune, FieldEffectCrc, gDRstyle, GeoMxWorkflows, geyser, hdxmsqc, hypeR, leapR, Melissa, meshr, methodical, MSnID, partCNV, PathoStat, PhyloProfile, PhyloProfileData, rebook, RegEnrich, RegionalST, regionReport, Rmmquant, Rqc, scMET, scTensor, scTGIF, simpleSingleCell, srnadiff

Suggests Me (1683): ACE, ADAM, ADAMgui, ADImpute, AffiXcan, affycoretools, aggregateBioVar, AHEnsDbs, AHLRBaseDbs, AHMassBank, AHMeSHDbs, AHPathbankDbs, AHPubMedDbs, AHWikipathwaysDbs, aIc, alabaster, alabaster.base, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.schemas, alabaster.se, alabaster.sfe, alabaster.spatial, alabaster.string, alabaster.vcf, ALDEx2, alevinQC, AllelicImbalance, AlphaMissense.v2023.hg19, AlphaMissense.v2023.hg38, AlpsNMR, AMARETTO, AMOUNTAIN, amplican, anansi, anglemania, animalcules, anndataR, annoLinker, annotate, annotation, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotationTools, annotatr, anota2seq, AnVIL, AnVILAz, AnVILBase, AnVILBilling, AnVILGCP, AnVILPublish, AnVILWorkflow, APAlyzer, APL, arrayQualityMetrics, arrays, artMS, ASGSCA, ASICS, ASICSdata, AssessORF, AssessORFData, ASSIGN, assorthead, asteRisk, asuri, atacInferCnv, ATACseqQC, ATACseqTFEA, atena, ath1121501frmavecs, atSNP, AUCell, autonomics, AWAggregator, AWAggregatorData, awst, BaalChIP, bacon, bamsignals, BANDITS, Banksy, banocc, barbieQ, barcodetrackR, basecallQC, BASiCS, basilisk, basilisk.utils, batchCorr, BatChef, batchelor, BatchQC, BatchSVG, Battlefield, bayNorm, baySeq, beachmat, beachmat.hdf5, beachmat.tiledb, beadarray, BeadDataPackR, BEclear, bedbaser, beer, benchdamic, BERT, betaHMM, betterChromVAR, bettr, BG2, BgeeDB, BigDataStatMeth, bigmelon, BindingSiteFinder, bioassayR, Biobase, biobtreeR, Bioc.gff, bioCancer, BioCartaImage, BiocAzul, BiocBaseUtils, BiocBook, BiocBuildReporter, BiocCheck, BiocFHIR, BiocFileCache, BiocHail, BiocHubsShiny, BiocIO, BiocMaintainerApp, biocmake, BiocManager, BiocNeighbors, BioCor, BiocParallel, BiocPkgDash, BiocPkgTools, biocroxytest, BiocSet, BiocSingular, BiocSklearn, biocthis, biocViews, biodb, biodbChebi, BioImageDbs, biomaRt, biomformat, BioNAR, BioNERO, BioPlex, biosigner, Biostrings, biotmle, biscuiteer, blacksheepr, blase, blima, blimaTestingData, BloodCancerMultiOmics2017, bluster, bnbc, bnem, BOBaFIT, bodymapRat, borealis, branchpointer, breakpointR, breakpointRdata, BreastSubtypeR, brendaDb, BREW3R.r, brgedata, BridgeDbR, BrowserViz, BSgenomeForge, bsseq, bugphyzz, bugsigdbr, BUMHMM, BumpyMatrix, BUScorrect, BUSpaRse, BUSseq, cadd.v1.6.hg19, cadd.v1.6.hg38, CAEN, CAFE, CAGEfightR, cageminer, CAGEr, CAGEWorkflow, CalibraCurve, CaMutQC, canceR, cardelino, Cardinal, CardinalIO, CardinalWorkflows, CARDspa, carnation, CARNIVAL, CATALYST, CatsCradle, cbaf, cBioPortalData, CBN2Path, CBNplot, cbpManager, CCAFE, ccfindR, ccImpute, CCPlotR, ccrepe, CDI, celda, CellBarcode, cellbaseR, CellBench, celldex, CelliD, cellity, CellMapper, CellMapperData, CellMentor, cellmig, CellMixS, cellxgenedp, censcyt, CENTREannotation, CENTREprecomputed, Cepo, CexoR, cfdnakit, cfDNAPro, cfTools, cfToolsData, ChemmineDrugs, ChemmineOB, ChemmineR, chevreulPlot, chevreulProcess, chevreulShiny, Chicago, chihaya, ChIPComp, ChIPDBData, chipenrich, chipenrich.data, ChIPexoQual, ChIPexoQualExample, ChIPpeakAnno, ChIPQC, chipseq, chipseqDB, chipseqDBData, Chromatograms, ChromSCape, cigarillo, CIMICE, CircSeqAlignTk, CiteFuse, ClassifyR, cleanUpdTSeq, CleanUpRNAseq, cleaver, clevRvis, clipper, cliProfiler, CLLmethylation, ClonalSim, ClustAll, clusterExperiment, ClusterFoldSimilarity, clusterSeq, ClusterSignificance, clustifyr, clustifyrdatahub, ClustIRR, clustSIGNAL, cmapR, CNEr, CNVfilteR, CNVMetrics, CNVRanger, COCOA, CoGAPS, cogeqc, Cogito, comapr, coMethDMR, compcodeR, CompensAID, CompoundDb, compSPOT, concordexR, CONFESS, consensusOV, consensusSeekeR, consICA, CONSTANd, conumee, CopyhelpeR, CopyNeutralIMA, CopyNumberPlots, Coralysis, coRdon, CoreGx, corral, corrmeta, coseq, CoSIA, CoSIAdata, COSMIC.67, cosmiq, covRNA, CPSM, cpvSNP, CrcBiomeScreen, CRISPRball, crisprBase, crisprBowtie, crisprBwa, crisprDesign, crisprScore, crisprScoreData, CRISPRseek, crisprShiny, CrispRVariants, crisprVerse, crisprViz, crumblr, crupR, csaw, csawUsersGuide, csdR, CSOA, CSSQ, CTCF, CTdata, CTDquerier, CTexploreR, ctsGE, CTSV, curatedBladderData, curatedCRCData, curatedMetagenomicData, curatedOvarianData, curatedPCaData, curatedTBData, curatedTCGAData, customCMPdb, cydar, cyjShiny, cypress, CyTOFpower, CytoGLMM, cytoKernel, cytomapper, CytoMDS, CytoMethIC, CytoPipeline, CytoPipelineGUI, cytoviewer, dada2, dagLogo, DAMEfinder, damidBind, DaMiRseq, Damsel, dandelionR, DAPAR, DAPARdata, dcanr, DCATS, ddPCRclust, decemedip, decompTumor2Sig, decontam, decontX, DeconvoBuddies, deconvR, decoupleR, DeeDeeExperiment, DeepTarget, DEFormats, DegCre, DEGreport, DEHOGT, DelayedArray, DelayedDataFrame, DelayedMatrixStats, DelayedRandomArray, DelayedTensor, DELocal, DeMixT, demuxmix, demuxSNP, DenoIST, densvis, DepecheR, DepInfeR, depmap, DEqMS, derfinder, derfinderData, derfinderHelper, derfinderPlot, DEScan2, DESpace, DEWSeq, DExMA, DExMAdata, DEXSeq, DFplyr, DiffBind, diffcyt, DifferentialRegulation, diffuStats, diffUTR, Dino, dir.expiry, DirichletMultinomial, discordant, distinct, dittoSeq, DMCFB, dmGsea, DMRcaller, DMRScan, DMRsegaldata, dmrseq, DNABarcodeCompatibility, DNABarcodes, DNAcycP2, DNAfusion, DNAZooData, DNEA, dominatR, doppelgangR, DoReMiTra, dorothea, Doscheda, doseR, DOtools, DOTSeq, doubletrouble, drawProteins, dreamlet, DRIMSeq, DropletTestFiles, DropletUtils, drugfindR, drugTargetInteractions, DSS, dStruct, DuoClustering2018, DuplexDiscovereR, dupRadar, easier, easierData, EasyCellType, easylift, easyreporting, easyRNASeq, EBImage, EDASeq, edgeR, EGSEA, EGSEA123, eiR, eisaR, ELMER, ELMER.data, EmpiricalBrownsMethod, emtdata, EMTscoreData, ENmix, EnrichDO, EnrichmentBrowser, enrichViewNet, ensembldb, eoPredData, EpiCompare, EpiDISH, epigraHMM, EpiMix, epimutacions, epimutacionsData, epiNEM, epiregulon, epiregulon.extra, epistack, epistasisGA, EpiTxDb, EpiTxDb.Hs.hg38, EpiTxDb.Mm.mm10, EpiTxDb.Sc.sacCer3, epivizr, epivizrChart, epivizrData, epivizrServer, epivizrStandalone, erccdashboard, ERSSA, escape, escheR, EuPathDB, evaluomeR, EventPointer, EWCE, ewceData, excluderanges, ExperimentHub, ExperimentHubData, ExperimentSubset, ExploreModelMatrix, ExpoRiskR, ExpressionNormalizationWorkflow, extraChIPs, faers, FamAgg, famat, FastqCleaner, fastRanges, fastreeR, fastseg, fCCAC, fCI, fcScan, FEAST, FeatSeekR, FELLA, fenr, fgga, FilterFFPE, findIPs, FindIT2, FinfoMDS, FLAMES, flowAI, flowcatchR, flowGraph, FlowSOM, flowSpecs, fmcsR, fobitools, fourDNData, fourSynergy, fRagmentomics, fraq, FRASER, furrowSeg, FuseSOM, G4SNVHunter, GA4GHclient, GA4GHshiny, GARS, gatom, GBScleanR, gcapc, GCPtools, gDNAinRNAseqData, gDNAx, gDR, gDRcore, gDRimport, gDRtestData, gDRutils, GDSArray, GeDi, gemma.R, GeneExpressionSignature, genefilter, genefu, GeneNetworkBuilder, GeneOverlap, geneplast, geneplast.data, geneplotter, generegulation, GENESIS, GeneStructureTools, genetic.algo.optimizeR, GeneTonic, GENIE3, GenomAutomorphism, GenomeInfoDb, GenomicAlignments, GenomicCoordinates, GenomicDataCommons, GenomicDistributions, GenomicDistributionsData, GenomicFeatures, GenomicFiles, GenomicInteractionNodes, GenomicInteractions, GenomicPlot, GenomicRanges, GenomicScores, GenomicState, GenomicSuperSignature, GenomicTuples, GenVisR, geomeTriD, GeuvadisTranscriptExpr, gg4way, ggbio, ggBubbles, ggkegg, ggmanh, GGPA, ggseqalign, ggspavis, ggtreeSpace, gINTomics, GladiaTOX, Glimma, glmGamPoi, glmSparseNet, GloScope, glycoTraitR, gmoviz, GMRP, GNOSIS, GOaGO, goatea, GOexpress, GOfan, GOfuncR, GOpro, goSorensen, goSTAG, GOstats, GrafGen, GRaNIE, granulator, graper, graph, GraphExperiment, graphite, GreyListChIP, GRmetrics, groHMM, GSABenchmark, GSAR, gscreend, GSE103322, GSE13015, GSE159526, GSE62944, GSEABase, GSEABenchmarkeR, GSEAmining, GSEMA, GSgalgoR, GSVA, GUIDEseq, Gviz, GWAS.BAYES, gwascat, GWASTools, gwasurvivr, GWENA, gypsum, h5mread, hammers, Harman, HarmanData, hca, HCAData, HCATonsilData, HD2013SGI, HDCytoData, HDF5Array, healthyControlsPresenceChecker, HelloRanges, HelloRangesData, hermes, Herper, HGC, HiCaptuRe, HiCBricks, HiCDataHumanIMR90, HiCDOC, HiCExperiment, HiContacts, HiContactsData, HiCool, HiCParser, HiCPotts, hicVennDiagram, HighlyReplicatedRNASeq, highthroughputassays, Hiiragi2013, HiLDA, hipathia, HIREewas, HiSpaR, HistoImagePlot, HiTC, HMP16SData, HMP2Data, HoloFoodR, hoodscanR, HPAanalyze, hpAnnot, hpar, HPiP, HTSFilter, HuBMAPR, HubPub, HumanAffyData, humanHippocampus2024, hummingbird, HVP, HybridExpress, Ibex, ideal, IFAA, igblastr, iGC, IgGeneUsage, igvR, igvShiny, IHW, IHWpaper, illuminaio, ILoReg, ImageArray, imageFeatureTCGA, imageTCGA, imageTCGAutils, IMAS, imcdatasets, imcRtools, immApex, immLynx, immReferent, immunoClust, immunogenViewer, immunotation, infercnv, Informeasure, InPAS, INSPEcT, INTACT, InTAD, InteractionSet, InterCellar, IONiseR, iPath, ipd, ipsRdbs, IRanges, ISAnalytics, iscream, iSEE, iSEEde, iSEEfier, iSEEhex, iSEEhub, iSEEindex, iSEEpathways, iSEEtree, iSEEu, ISLET, islify, IsoBayes, IsoCorrectoR, IsoCorrectoRGUI, isomiRs, IVAS, ivygapSE, JASPAR2022, JASPAR2024, jazzPanda, JohnsonKinaseData, jvecfor, karyoploteR, katdetectr, KEGGREST, kissDE, kmcut, koinar, LACE, LACHESIS, lcmsPlot, ldblock, lefser, LegATo, lemur, levi, liftOver, limma, limpa, limpca, LimROTS, lineagespot, LinkHD, linkSet, Linnorm, lipidr, LipidTrend, lisaClust, lncRna, loci2path, LOLA, LoomExperiment, lpsymphony, LRBaseDbi, LRcell, LRcellTypeMarkers, m6Aboost, Macarron, MACSr, made4, magmaR, magpie, magrene, MAI, MAPFX, MariNET, markeR, marr, MarZIC, maser, MassSpecWavelet, MAST, mastR, MatrixQCvis, MatrixRider, matter, MBASED, MBECS, mbkmeans, mbQTL, MBttest, MCbiclust, mCSEA, mCSEAdata, mcsurvdata, MDSvis, MEAL, MEAT, MEB, MEDIPS, megadepth, MEIGOR, MeLSI, MerfishData, messina, metabCombiner, metabinR, MetaboAnnotation, MetaboAnnotatoR, MetaboCoreUtils, MetaboDynamics, metabolomicsWorkbenchR, metabom8, MetaboSignal, MetaDICT, metagene2, MetaGxOvarian, MetaGxPancreas, MetaPhOR, metapod, MetaProViz, MetaScope, metaseqR2, methimpute, methInheritSim, MethPed, MethReg, MethylAid, MethylAidData, methylCC, methylclock, methylclockData, methyLImp2, methylInheritance, MethylMix, methylscaper, MethylSeqData, methylSig, MetMashR, MetNet, mfa, MGnifyR, mia, miaDash, miaSim, miaTime, miaViz, microbiome, MicrobiomeBenchmarkData, microbiomeDataSets, microSTASIS, MICSQTL, miloR, mimager, minfi, minionSummaryData, miQC, MIRA, miRcomp, MIRit, miRSM, miRspongeR, mirTarRnaSeq, missMethyl, missRows, mist, mistyR, mitology, mixOmics, MLInterfaces, MMDiff2, MMUPHin, mnem, moanin, mobileRNA, MODA, Modstrings, MOFA2, MOFAdata, mogsa, MoleculeExperiment, MOMA, monaLisa, Moonlight2R, MoonlightR, MOSClip, mosdef, MOSim, Motif2Site, motifbreakR, MotifDb, motifStack, motifTestR, MouseAgingData, MouseFM, MouseGastrulationData, MouseThymusAgeing, mpra, MSA2dist, MsBackendMassbank, MsBackendMetaboLights, MsBackendMgf, MsBackendMsp, MsBackendRawFileReader, MsBackendSql, MsCoreUtils, MsDataHub, MsExperiment, MsFeatures, msigdb, msImpute, mslp, MSMB, MSnbase, mspms, MSPrep, msPurity, msqc1, msqrob2, MsQuality, MSstats, MSstatsBioNet, MSstatsLiP, MSstatsLOBD, MSstatsResponse, MSstatsTMT, MuData, MultiAssayExperiment, MultiBaC, multiclassPairs, multicrispr, MultiDataSet, multiGSEA, multiHiCcompare, multiMiR, MultimodalExperiment, MultiRNAflow, multistateQTL, multiWGCNA, multiWGCNAdata, mumosa, MungeSumstats, muscat, muscData, musicatk, muSpaData, MutationalPatterns, mutscan, MutSeqR, MutSeqRData, MWASTools, mygene, myvariant, mzR, NADfinder, NanoMethViz, NanoStringDiff, nanotubes, ncGTW, ncRNAtools, ndexr, Nebulosa, nemoR, nempi, NestLink, net4pg, NetActivity, NetActivityData, netboost, nethet, NetPathMiner, netprioR, netSmooth, NewWave, nfcore.utils, ngsReports, nipalsMCIA, nmrdata, nnSVG, nondetects, NormalyzerDE, normr, notame, notameStats, notameViz, NPARC, npGSEA, nucleoSim, nucleR, oligo, omicade4, omicRexposome, omicsGMF, OmicsMLRepoR, omicsPrint, omicsViewer, Omixer, OmnipathR, omXplore, OnassisJavaLibs, oncoscanR, OncoScore, OncoSimulR, ontoProc, openSkies, optimalFlow, optimalFlowData, OPWeight, ORFhunteR, ORFik, org.Hbacteriophora.eg.db, Organism.dplyr, OrganismDbi, orthogene, orthos, orthosData, Oscope, OSTA.data, OUTRIDER, OutSplice, OVESEG, PAA, packFinder, padma, PAIRADISE, pairedGSEA, pairkat, PanomiR, PANTHER.db, parati, parglms, parody, pasilla, PasillaTranscriptExpr, Path2PPI, pathlinkR, pathMED, pcaExplorer, PCAN, PCHiCdata, PDATK, PeacoQC, peakCombiner, peakPantheR, Pedixplorer, PepSetTest, PepsNMR, PepsNMRData, pfamAnalyzeR, pgxRpi, phantasus, phantasusLite, PharmacoGx, phastCons30way.UCSC.hg38, phastCons35way.UCSC.mm39, phenomis, phenopath, philr, PhIPData, PhosR, phyloP35way.UCSC.mm39, phyloseq, piano, PICB, pipeComp, PIPETS, Pirat, PIUMA, plaid, planttfhunter, plasmut, PlinkMatrix, plotGrouper, PLSDAbatch, plyinteractions, plyranges, pmp, PMScanR, PoDCall, poem, pogos, PolySTest, POMA, posDemux, postNet, powerTCR, POWSC, ppcseq, pqsfinder, pram, preciseTAD, preciseTADhub, PrInCE, proBatch, proDA, profileplyr, profileScoreDist, progeny, projectR, pRoloc, pRolocGUI, PRONE, PROPER, Prostar, ProteinGymR, ProteoDisco, ProteoMM, PSMatch, ptairData, ptairMS, PTMods, PureCN, PWMEnrich, qcmetrics, QDNAseq, QFeatures, qmtools, qpgraph, QRscore, qsea, qsmooth, QSutils, qsvaR, QTLExperiment, Qtlizer, quantiseqr, quantro, QuasR, queeems, R3CPET, RadioGx, raer, raerdata, RaggedExperiment, RAIDS, rain, ramwas, randRotation, RankMap, RAREsim, Rarr, rat2302frmavecs, rawDiag, rawrr, RBedMethyl, RBGL, RBioFormats, Rbowtie, Rbwa, rcellminer, rcellminerData, rCGH, RcisTarget, Rcollectl, RCSL, Rcwl, RcwlPipelines, RCX, RCy3, RCyjs, recount, recount3, recountmethylation, recountWorkflow, recoup, RedeR, Rediscover, RedisParam, ReducedExperiment, Rega, regionalpcs, regioneR, regioneReloaded, regsplice, regutools, ResidualMatrix, RESOLVE, retrofit, ReUseData, rexposome, rfaRm, Rfastp, RFGeneRank, RFLOMICS, RforProteomics, rfPred, RgnTX, rgoslin, RGraph2js, RGSEA, rhdf5, rhdf5client, rhdf5filters, Rhdf5lib, rhinotypeR, Rhisat2, Rhtslib, RiboCrypt, RiboProfiling, riboSeqR, ribosomeProfilingQC, rifi, rifiComparative, Rigraphlib, RIVER, RJMCMCNucleosomes, rjsoncons, RMassBank, rmspc, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.Data, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAseq123, rnaseqcomp, RNAseqCovarImpute, RnaSeqSampleSize, RnaSeqSampleSizeData, RNAshapeQC, Rnits, roastgsa, ROC, ROCpAI, rols, ropls, rprimer, rpx, rqt, rrvgo, Rsamtools, rScudo, rsemmed, rSWeeP, RTCGAToolbox, RTN, RTNduals, RTNsurvival, Rtpca, rTRM, RUCova, RUVSeq, Rvisdiff, RVS, rWikiPathways, rworkflows, S4Arrays, S4Vectors, sampleClassifier, sampleClassifierData, sangerseqR, SanityR, satuRn, SC3, scaeData, scafari, ScaledMatrix, scanMiR, scanMiRApp, scanMiRData, SCArray.sat, scATAC.Explorer, scater, SCBN, scBubbletree, scCB2, scClassify, sccomp, scConform, scDblFinder, scDD, scDDboost, scDesign3, scDiagnostics, scDotPlot, scds, scECODA, SCFA, scFeatureFilter, scFeatures, scGraphVerse, scHiCcompare, scifer, scLANE, scLang, SCLCBam, scmap, scMerge, scMitoMut, scMultiome, SCnorm, scone, scoreInvHap, scoup, scp, scPCA, scpdata, scPipe, scQTLtools, scran, scrapper, scReClassify, screenCounter, ScreenR, scRepertoire, scRNAseq, scRNAseqApp, scruff, scTHI, scToppR, scTreeViz, scTypeEval, scuttle, scviR, seahtrue, sechm, segmentSeq, selectKSigs, SEMPLR, seq.hotSPOT, seqCAT, SeqGate, Seqinfo, seqLogo, seqpac, seqPattern, seqsetvis, SeqSQC, Seqtometry, sequencing, SeqVarTools, sesame, SETA, SEtools, sevenC, seventyGeneData, SFEData, sfi, SGCP, SGSeq, SharedObject, shinyDSP, shinyepico, shinyMethyl, ShortRead, SIAMCAT, SigCheck, SigFuge, signatureSearch, signifinder, SigsPack, SimBenchData, SIMD, SimFFPE, similaRpeak, SIMLR, simPIC, simpleSeg, sincell, singIST, Single.mTEC.Transcriptomes, SingleCellAlleleExperiment, SingleCellExperiment, SingleCellMultiModal, singleCellTK, SingleR, singscore, SiPSiC, sitadela, Site2Target, sitePath, sketchR, slalom, slingshot, SMAD, smartid, SmartPhos, smokingMouse, smoothclust, SMTrackR, snapcount, snifter, SNPediaR, SNPhood, SNPhoodData, soGGi, SomaScan.db, SOMNiBUS, sosta, SpaceMarkers, SpaceTrooper, spacexr, SpaNorm, spARI, sparrow, SparseArray, sparseMatrixStats, sparsenetgls, SparseSignatures, spaSim, SpatialArtifacts, SpatialCPie, SpatialDatasets, spatialDE, spatialDmelxsim, SpatialExperiment, SpatialExperimentIO, spatialFDA, SpatialFeatureExperiment, spatialHeatmap, spatialLIBD, SpatialOmicsOverlay, speckle, specL, Spectra, SpectralTAD, SpectraQL, SpectriPy, SPIAT, SPICEY, spicyR, SpiecEasi, spillR, splatter, SpliceImpactR, SplineDV, SPLINTER, splots, SpNeigh, spoon, SpotClean, SPOTlight, SpotSweeper, spqn, SPsimSeq, SQLDataFrame, squallms, sRACIPE, srnadiff, SRscore, sSNAPPY, ssrch, StabMap, stageR, staRgate, STATegRa, StatescopeR, Statial, statTarget, StepReg, StepRegShiny, STexampleData, stJoincount, stPipe, strandCheckR, struct, Structstrings, structToolbox, SubCellBarCode, SubcellularSpatialData, SUITOR, SummarizedExperiment, SuperCellCyto, SurfR, sva, svaRetro, SVMDO, swfdr, switchde, synapsis, synaptome.data, SynExtend, synlet, syntenet, systemPipeR, systemPipeRdata, systemPipeShiny, systemPipeTools, TabulaMurisData, TabulaMurisSenisData, tadar, TADCompare, tanggle, TAPseq, TargetDecoy, TargetSearch, tartare, TaxSEA, TBSignatureProfiler, TCGAbiolinks, TCGAbiolinksGUI.data, TCGAutils, TCGAWorkflowData, TDbasedUFE, TDbasedUFEadv, TEKRABber, TENET, TENET.AnnotationHub, TENET.ExperimentHub, TENxBrainData, TENxBUSData, TENxIO, TENxPBMCData, tenXplore, TENxVisiumData, TENxXeniumData, terapadog, terraTCGAdata, TFactSR, TFARM, TFBSTools, TFEA.ChIP, TFHAZ, TFutils, tidybulk, tidyCoverage, tidyexposomics, tidyFlowCore, tidyGenR, tidyprint, tidysbml, tidySingleCellExperiment, tidySpatialExperiment, tidySummarizedExperiment, tigre, TileDBArray, timecoursedata, timeOmics, tissueTreg, TMExplorer, TMixClust, TMSig, TOAST, tomoda, tomoseqr, TOP, topconfects, topdownr, topGO, toppgene, ToxicoGx, TPP, TPP2D, tpSVG, tracktables, trackViewer, TrajectoryUtils, transcriptogramer, transcriptR, transformGamPoi, transmogR, transomics2cytoscape, TransOmicsData, traseR, TreeAndLeaf, treeclimbR, treekoR, TreeSummarizedExperiment, TREG, Trendy, TRESS, tricycle, TrIdent, tripr, tRNA, tRNAdbImport, tRNAscanImport, TRONCO, TTMap, tuberculosis, TurboNorm, TVTB, tweeDEseqCountData, twoddpcr, txcutr, txdbmaker, UCell, UCSC.utils, UCSCRepeatMasker, Ularcirc, UMI4Cats, uncoverappLib, UniProt.ws, updateObject, UPDhmm, variancePartition, VariantAnnotation, VariantExperiment, VariantFiltering, variants, VariantToolsData, VCFArray, VDJdive, VectraPolarisData, velociraptor, VERSO, vidger, ViSEAGO, VisiumIO, visiumStitched, vissE, VISTA, Voyager, vsclust, vsn, wateRmelon, wavClusteR, wavFeatExt, WeberDivechaLCdata, weitrix, wpm, xCell2, xcms, xcore, XeniumIO, xenLite, Xeva, yamss, YAPSA, ZarrArray, zebrafishRNASeq, zellkonverter, zenith, zinbwave, zitools, ZygosityPredictor