BiocFileCache
Manage Files Across Sessions
Bioconductor version: 3.23 · Package version: 3.2.0
This package creates a persistent on-disk cache of files that the user can add, update, and retrieve. It is useful for managing resources (such as custom Txdb objects) that are costly or difficult to create, web resources, and data files used across sessions.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocFileCache")Details
| Maintainer | Lori Shepherd <lori.shepherd@roswellpark.org> |
| Author | Lori Shepherd [aut, cre], Martin Morgan [aut] |
| License | Artistic-2.0 |
| Bug Reports | https://github.com/Bioconductor/BiocFileCache/issues |
| Downloads rank | 29548 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Software |
Download
Dependencies
Depends: R (>= 3.4.0), dbplyr (>= 1.0.0)
Imports: methods, stats, utils, dplyr, RSQLite, DBI, filelock, curl, httr2
Suggests: testthat, knitr, BiocStyle, rmarkdown, rtracklayer
Reverse dependencies
Depends On Me (8): AnnotationHub, easylift, ExperimentHub, JASPAR2022, JASPAR2024, RcwlPipelines, scATAC.Explorer, TMExplorer
Imports Me (105): AlphaMissenseR, AMARETTO, atSNP, autonomics, BayesSpace, bedbaser, BiocBuildReporter, BiocCheck, BiocHail, BiocPkgTools, biomaRt, BioPlex, brendaDb, bugphyzz, bugsigdbr, BulkSignalR, cbaf, cBioPortalData, CBNplot, CellBench, convertid, CTDquerier, curatedBreastData, customCMPdb, CytoPipeline, DeconvoBuddies, depmap, DNAZooData, drugTargetInteractions, easyRNASeq, enhancerHomologSearch, EnMCB, EnrichmentBrowser, EpiTxDb, fenr, fgga, fourDNData, GeDi, geneplast.data, GenomicScores, GenomicSuperSignature, ggkegg, GSEABenchmarkeR, gwascat, hca, HiContactsData, HPO.db, HumanRetinaLRSData, imageFeatureTCGA, iSEEindex, MBQN, MetaScope, MicrobiomeBenchmarkData, MIRit, motifbreakR, MotifPeeker, MPO.db, MsBackendMetaboLights, msPurity, NxtIRFdata, OmicsMLRepoR, ontoProc, ORFik, org.Mxanthus.db, Organism.dplyr, orthosData, OSTA.data, PANTHER.db, PhIPData, PlinkMatrix, PMScanR, postNet, psichomics, rBLAST, recount3, recountmethylation, regutools, ReUseData, RiboDiPA, rpx, scviR, sesame, SFEData, signeR, SingleCellMultiModal, SMTrackR, spacexr, SpatialExperiment, spatialLIBD, SpatialOmicsOverlay, SpliceImpactR, SpliceWiz, SurfR, tenXplore, terraTCGAdata, TFutils, tidyexposomics, tomoseqr, toppgene, tximeta, UMI4Cats, uncoverappLib, UniProt.ws, waddR, xenLite
Suggests Me (45): anndataR, AnnotationForge, bambu, Bioc.gff, BiocSet, ChIPpeakAnno, chipseqDB, CoGAPS, CRISPRseek, dominoSignal, emtdata, EMTscoreData, EpiCompare, epiRomics, fastreeR, fluentGenomics, GRaNIE, HicAggR, HiCDCPlus, HiCExperiment, HiCool, HighlyReplicatedRNASeq, ImageArray, iscream, MethReg, MethylSeqData, MetMashR, msigdb, Nebulosa, nemoR, nipalsMCIA, progeny, qsvaR, scCustomize, seqsetvis, simpleSingleCell, spatialHeatmap, structToolbox, TCGAutils, TENxBrainData, TENxPBMCData, TREG, visiumStitched, XeniumIO, zellkonverter