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BiocBaseUtils

Utility and internal functions for Bioconductor packages

Bioconductor version: 3.23 · Package version: 1.14.2

The package coalesces typical helper functions that are scattered throughout the Bioconductor ecosystem. It aims to reduce code redundancy by formalizing functions often used by Bioconductor developers. These functions include operations such as replacing slots in an object, selecting observations for show methods, labeling function life cycles, and more.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocBaseUtils")

Details

MaintainerMarcel Ramos <marcel.ramos@sph.cuny.edu>
AuthorMarcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Martin Morgan [ctb], Hervé Pagès [ctb]
LicenseArtistic-2.0
URLhttps://www.github.com/Bioconductor/BiocBaseUtils
Bug Reportshttps://www.github.com/Bioconductor/BiocBaseUtils/issues
Downloads rank13330
Source branchRELEASE_3_23
biocViewsInfrastructure, Software

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: methods, utils

Suggests: knitr, rmarkdown, BiocStyle, tinytest

Reverse dependencies

Imports Me (30): AlphaMissenseR, AnnotationHub, AnVIL, AnVILAz, AnVILGCP, AnVILPublish, Bioc.gff, BiocCheck, BiocFHIR, BiocPkgDash, cBioPortalData, DNAfusion, GCPtools, GenomicFiles, GraphExperiment, HistoImagePlot, imageFeatureTCGA, imageTCGAutils, iSEEfier, looking4clusters, MultiAssayExperiment, RaggedExperiment, scGraphVerse, SingleCellMultiModal, TCGAutils, TENxIO, UniProt.ws, VisiumIO, visiumStitched, XeniumIO

Suggests Me (1): scifer