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Bioc.gff

Read and write GFF and GTF files

Bioconductor version: 3.23 · Package version: 1.2.0

Parse GFF and GTF files using C++ classes. The package also provides utilities to read and write GFF3 files. The GFF (General Feature Format) format is a tab-delimited file format for describing genes and other features of DNA, RNA, and protein sequences. GFF files are often used to describe the features of genomes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Bioc.gff")

Details

MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
AuthorMichael Lawrence [aut], Hervé Pagès [aut], Marcel Ramos [ctb], Bioconductor Package Maintainer [cre]
LicenseArtistic-2.0
URLhttps://github.com/Bioconductor/Bioc.gff
Bug Reportshttps://github.com/Bioconductor/Bioc.gff/issues
Downloads rank122
Source branchRELEASE_3_23
biocViewsDataImport, Infrastructure, Software

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Dependencies

Depends: R (>= 4.5.0)

Imports: BiocBaseUtils, BiocGenerics, BiocIO, curl, GenomicRanges, IRanges, methods, Rsamtools, S4Vectors, Seqinfo, stats, utils, XVector

LinkingTo: S4Vectors, XVector, IRanges

Suggests: BiocFileCache, BiocStyle, GenomicFeatures, GenomeInfoDbData, knitr, httr2, rmarkdown, rvest, tinytest, txdbmaker, TxDb.Hsapiens.UCSC.hg19.knownGene

Reverse dependencies

Suggests Me (1): TCGAutils