Bioc.gff
Read and write GFF and GTF files
Bioconductor version: 3.23 · Package version: 1.2.0
Parse GFF and GTF files using C++ classes. The package also provides utilities to read and write GFF3 files. The GFF (General Feature Format) format is a tab-delimited file format for describing genes and other features of DNA, RNA, and protein sequences. GFF files are often used to describe the features of genomes.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Bioc.gff") Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Michael Lawrence [aut], Hervé Pagès [aut], Marcel Ramos [ctb], Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/Bioc.gff |
| Bug Reports | https://github.com/Bioconductor/Bioc.gff/issues |
| Downloads rank | 122 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, Software |
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Dependencies
Depends: R (>= 4.5.0)
Imports: BiocBaseUtils, BiocGenerics, BiocIO, curl, GenomicRanges, IRanges, methods, Rsamtools, S4Vectors, Seqinfo, stats, utils, XVector
LinkingTo: S4Vectors, XVector, IRanges
Suggests: BiocFileCache, BiocStyle, GenomicFeatures, GenomeInfoDbData, knitr, httr2, rmarkdown, rvest, tinytest, txdbmaker, TxDb.Hsapiens.UCSC.hg19.knownGene
Reverse dependencies
Suggests Me (1): TCGAutils