BioTIP

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: 3.23 · Package version: 1.26.0

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BioTIP")

Maintainer	Felix Yu <felixy@uchicago.edu> and X Holly Yang <xyang2@uchicago.edu>
Author	Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang
License	GPL-2
URL	https://github.com/xyang2uchicago/BioTIP
Downloads rank	282
Source branch	RELEASE_3_23
biocViews	GeneExpression, RNASeq, Sequencing, Software, Transcription

Dependencies

Depends: R (>= 3.6)

Imports: igraph, cluster, psych, stringr, GenomicRanges, MASS, scran, methods, stats, utils, grDevices, graphics, foreach, doParallel

Suggests: knitr, markdown, base, rmarkdown, ggplot2