BgeeDB
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology
Bioconductor version: 3.23 · Package version: 2.38.1
A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BgeeDB")Details
| Maintainer | Julien Wollbrett <julien.wollbrett@unil.ch>, Julien Roux <julien.roux@unibas.ch>, Andrea Komljenovic <andreakomljenovic@gmail.com>, Frederic Bastian <bgee@sib.swiss> |
| Author | Andrea Komljenovic [aut, cre], Julien Roux [aut, cre] |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/BgeeDB/BgeeDB_R |
| Bug Reports | https://github.com/BgeeDB/BgeeDB_R/issues |
| Downloads rank | 366 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, GO, GeneExpression, GeneSetEnrichment, Microarray, Sequencing, Software |
Documentation
- BgeeDB, an R package for retrieval of curated expression datasets and for gene list enrichment tests