BSgenomeForge

Forge your own BSgenome data package

Bioconductor version: 3.23 · Package version: 1.12.0

A set of tools to forge BSgenome data packages. Supersedes the old seed-based tools from the BSgenome software package. This package allows the user to create a BSgenome data package in one function call, simplifying the old seed-based process.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenomeForge")

Details

Maintainer	Hervé Pagès <hpages.on.github@gmail.com>
Author	Hervé Pagès [aut, cre], Atuhurira Kirabo Kakopo [aut], Emmanuel Chigozie Elendu [ctb], Prisca Chidimma Maduka [ctb]
License	Artistic-2.0
URL	https://bioconductor.org/packages/BSgenomeForge
Bug Reports	https://github.com/Bioconductor/BSgenomeForge/issues
Downloads rank	349
Source branch	RELEASE_3_23
biocViews	Alignment, Annotation, DataImport, DataRepresentation, GenomeAnnotation, GenomeAssembly, Infrastructure, SequenceMatching, Sequencing, Software

Download

Source package

Dependencies

Depends: R (>= 4.3.0), methods, BiocGenerics, IRanges, Seqinfo, GenomeInfoDb (>= 1.45.5), Biostrings (>= 2.77.2), BSgenome (>= 1.77.1)

Imports: utils, stats, Biobase, S4Vectors (>= 0.47.6), GenomicRanges (>= 1.61.1), BiocIO, rtracklayer (>= 1.69.1)

Suggests: GenomicFeatures, Rsamtools, testthat, knitr, rmarkdown, BiocStyle, devtools, BSgenome.Celegans.UCSC.ce2

Reverse dependencies

Suggests Me (2): BSgenome, TmCalculator