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BREW3R.r

R package associated to BREW3R

Bioconductor version: 3.23 · Package version: 1.8.0

This R package provide functions that are used in the BREW3R workflow. This mainly contains a function that extend a gtf as GRanges using information from another gtf (also as GRanges). The process allows to extend gene annotation without increasing the overlap between gene ids.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BREW3R.r")

Details

MaintainerLucille Lopez-Delisle <lucille.delisle@epfl.ch>
AuthorLucille Lopez-Delisle [aut, cre] (ORCID: <https://orcid.org/0000-0002-1964-4960>)
LicenseGPL-3
URLhttps://github.com/lldelisle/BREW3R.r
Bug Reportshttps://github.com/lldelisle/BREW3R.r/issues/
Downloads rank183
Source branchRELEASE_3_23
biocViewsGenomeAnnotation, Software

Documentation

Download

Dependencies

Imports: GenomicRanges, methods, rlang, S4Vectors, utils

Suggests: testthat (>= 3.0.0), IRanges, knitr, rmarkdown, BiocStyle, rtracklayer