BPRMeth
Model higher-order methylation profiles
Bioconductor version: 3.23 · Package version: 1.38.0
The BPRMeth package is a probabilistic method to quantify explicit features of methylation profiles, in a way that would make it easier to formally use such profiles in downstream modelling efforts, such as predicting gene expression levels or clustering genomic regions or cells according to their methylation profiles.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BPRMeth") Details
| Maintainer | Chantriolnt-Andreas Kapourani <kapouranis.andreas@gmail.com> |
| Author | Chantriolnt-Andreas Kapourani [aut, cre] |
| License | GPL-3 | file LICENSE |
| Status | Deprecated |
| Downloads rank | 334 |
| Source branch | RELEASE_3_23 |
| biocViews | Bayesian, Clustering, Coverage, DNAMethylation, Epigenetics, FeatureExtraction, GeneExpression, GeneRegulation, Genetics, ImmunoOncology, KEGG, RNASeq, Regression, Sequencing, SingleCell, Software |
Documentation
Download
Dependencies
Depends: R (>= 3.5.0), GenomicRanges
Imports: assertthat, methods, MASS, doParallel, parallel, e1071, earth, foreach, randomForest, stats, IRanges, S4Vectors, data.table, graphics, truncnorm, mvtnorm, Rcpp (>= 0.12.14), matrixcalc, magrittr, kernlab, ggplot2, cowplot, BiocStyle
LinkingTo: Rcpp, RcppArmadillo
Reverse dependencies
Depends On Me (1): Melissa