AnnotationHubData
Transform public data resources into Bioconductor Data Structures
Bioconductor version: 3.23 · Package version: 1.42.0
These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnnotationHubData")Details
| Maintainer | Bioconductor Package Maintainer <maintainer@bioconductor.org> |
| Author | Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre] |
| License | Artistic-2.0 |
| Downloads rank | 912 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Software |
Documentation
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Dependencies
Depends: R (>= 3.2.2), methods, utils, S4Vectors (>= 0.7.21), IRanges (>= 2.3.23), GenomicRanges, AnnotationHub (>= 2.15.15)
Imports: GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocManager, biocViews, BiocCheck, graph, AnnotationDbi, Biobase, Biostrings, DBI, Seqinfo, GenomeInfoDb (>= 1.45.5), OrganismDbi, RSQLite, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
Suggests: RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData, rmarkdown, HubPub
Reverse dependencies
Depends On Me (1): ExperimentHubData
Imports Me (3): AHEnsDbs, AHMassBank, EuPathDB
Suggests Me (6): EPICv2manifest, GenomicState, HubPub, humanHippocampus2024, smokingMouse, TENET.AnnotationHub