AnnotationForge

Tools for building SQLite-based annotation data packages

Bioconductor version: 3.23 · Package version: 1.54.0

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnnotationForge")

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	Marc Carlson [aut], Hervé Pagès [aut], Madelyn Carlson [ctb] ('Creating probe packages' vignette translation from Sweave to Rmarkdown / HTML), Bioconductor Package Maintainer [cre]
License	Artistic-2.0
URL	https://bioconductor.org/packages/AnnotationForge
Bug Reports	https://github.com/Bioconductor/AnnotationForge/issues
Downloads rank	2435
Source branch	RELEASE_3_23
biocViews	Annotation, Infrastructure, Software

Dependencies

Depends: R (>= 3.5.0), methods, utils, BiocGenerics (>= 0.15.10), Biobase (>= 1.17.0), AnnotationDbi (>= 1.33.14)

Imports: DBI, RSQLite, XML, S4Vectors, RCurl

Suggests: biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db, rmarkdown, BiocStyle, knitr, BiocManager, BiocFileCache, RUnit

Reverse dependencies

Imports Me (4): AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats, ViSEAGO

Suggests Me (2): AnnotationDbi, AnnotationHub