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AnVILWorkflow

Run workflows implemented in Terra/AnVIL workspace

Bioconductor version: 3.23 · Package version: 1.12.0

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILWorkflow")

Details

MaintainerSehyun Oh <shbrief@gmail.com>
AuthorSehyun Oh [aut, cre] (ORCID: <https://orcid.org/0000-0002-9490-3061>), Marcel Ramos [ctb] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Kai Gravel-Pucillo [aut]
LicenseArtistic-2.0
URLhttps://github.com/shbrief/AnVILWorkflow
Bug Reportshttps://github.com/shbrief/AnVILWorkflow/issues
Downloads rank160
Source branchRELEASE_3_23
biocViewsInfrastructure, Software

Documentation

Download

Dependencies

Depends: R (>= 4.4.0), AnVILGCP, AnVILBase, httr

Imports: AnVIL, dplyr, jsonlite, rlang, tibble, tidyr, utils, methods, plyr, stringr

Suggests: knitr, BiocStyle