AnVIL
Bioconductor on the AnVIL compute environment
Bioconductor version: 3.23 · Package version: 1.24.0
The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides programatic access to the Dockstore, Leonardo, Rawls, TDR, and Terra RESTful programming interfaces. For platform-specific user-level functionality, see either the AnVILGCP or AnVILAz package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AnVIL")Details
| Maintainer | Marcel Ramos <marcel.ramos@sph.cuny.edu> |
| Author | Marcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>), Martin Morgan [aut] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Kayla Interdonato [aut], Yubo Cheng [aut], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Sehyun Oh [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/Bioconductor/AnVIL |
| Bug Reports | https://github.com/Bioconductor/AnVIL/issues |
| Downloads rank | 904 |
| Source branch | RELEASE_3_23 |
| biocViews | Infrastructure, Software |
Documentation
- Dockstore and Bioconductor for AnVIL
- Introduction to the AnVIL package
- Running an AnVIL workflow within R
Download
Dependencies
Depends: R (>= 4.5.0), dplyr, AnVILBase
Imports: stats, utils, methods, futile.logger, GCPtools, jsonlite, httr, digest, keyring, rapiclient, yaml, tibble, shiny, DT, miniUI, htmltools, BiocBaseUtils
Suggests: knitr, rmarkdown, testthat, withr, readr, BiocStyle, devtools, AnVILAz, AnVILGCP, lifecycle
Reverse dependencies
Depends On Me (2): BiocAzul, cBioPortalData
Imports Me (4): AnVILPublish, AnVILWorkflow, bedbaser, terraTCGAdata